HTTomo (High Throughput Tomography pipeline)

HTTomo (High Throughput Tomography pipeline)#

HTTomo is a user interface (UI) written in Python for fast big data processing using MPI protocols. It orchestrates I/O data operations and enables processing on a CPU and/or a GPU. HTTomo utilises other libraries, such as TomoPy and HTTomolibgpu as backends for data processing. The methods from the libraries are exposed through YAML templates to enable fast task programming.

Installation#

See detailed instructions for installation .

Documentation#

Please check the full documentation.

Running HTTomo:#

  • Install the module following any chosen installation path.

  • For help with the command line interface, execute python -m httomo --help

  • Choose the existing YAML pipeline or build a new one using ready-to-be-used templates.

  • Optional: perform the validity check of the YAML pipeline file with the YAML checker.

  • Run HTTomo with python -m httomo run [OPTIONS] IN_DATA_FILE YAML_CONFIG OUT_DIR, see more on that here.

Release Tagging Scheme#

We use the setuptools-git-versioning package for automatically determining the version from the latest git tag. For this to work, release tags should start with a v followed by the actual version, e.g. v1.1.0a.