Outside Diamond

Make sure to activate the conda environment that has HTTomo installed in it.

Serial

This is the simplest case:

$ python -m httomo run IN_FILE YAML_CONFIG OUT_DIR

Parallel

HTTomo’s parallel processing capability has been implemented with mpi4py and h5py. Therefore, HTTomo is intended to be run in parallel by using the mpirun command (or equivalent, such as srun for SLURM clusters):

$ mpirun -np N python -m httomo run IN_FILE YAML_CONFIG OUT_DIR

where N is the number of parallel processes to launch.