Outside Diamond#
Make sure to activate the conda environment that has HTTomo installed in it.
Serial#
This is the simplest case:
$ python -m httomo run IN_FILE YAML_CONFIG OUT_DIR
Parallel#
HTTomo’s parallel processing capability has been implemented with mpi4py
and h5py
. Therefore, HTTomo is intended to be run in parallel by using
the mpirun
command (or equivalent, such as srun
for SLURM
clusters):
$ mpirun -np N python -m httomo run IN_FILE YAML_CONFIG OUT_DIR
where N
is the number of parallel processes to launch.