Running HTTomo#
The next section gives an overview of the commands to quickly get started running HTTomo.
For those interested in learning about the different ways HTTomo can be configured to run, there is the In-depth guide section.
Quick Overview of Running HTTomo#
Required inputs#
In order to run HTTomo you require a data file (an HDF5 file) and a YAML process list file that describes the desired processing pipeline. For information on getting started creating this YAML file, please see Configure efficient pipelines and also ready-to-be-used Full YAML pipelines.
Running HTTomo Inside or Outside of Diamond#
As HTTomo was developed at the Diamond Light Source, there have been some extra efforts to accommodate the users at Diamond (for example, aliases for commands and launcher scripts). As such, there are some differences as to how one would run HTTomo at Diamond vs. outside of Diamond, and the guidance on running HTTomo has been split into two sections accordingly.
Additionally, HTTomo is able to run in serial or in parallel depending on what computer hardware is available to the user, so some sections have been further split into these two subsections where relevant.