httomo.transform_layer.TransformLayer

class httomo.transform_layer.TransformLayer(comm: mpi4py.MPI.Comm, repo=httomo_backends.methods_database.query.MethodDatabaseRepository, save_all=False, out_dir: PathLike | None = None)

Methods

__init__(comm[, repo, save_all, out_dir])
insert_data_reducer(pipeline)	This will always insert data reducer as method 0 right after the loader
insert_globstats_after_sweep(pipeline, ...)	Global statistics method is inserted to perform data rescaling before image saving
insert_rescaletoint_after_stats_sweep(pipeline)	Data rescaler goes after global statistics method.
insert_save_images_after_sweep(pipeline)	For sweep methods we add image saving method after the global statistics and rescaler methods.
insert_save_methods(pipeline)
transform(pipeline)

insert_data_reducer(pipeline: Pipeline) → Pipeline

This will always insert data reducer as method 0 right after the loader

insert_globstats_after_sweep(pipeline: Pipeline, method_to_rescale: str | None) → Pipeline

Global statistics method is inserted to perform data rescaling before image saving

insert_rescaletoint_after_stats_sweep(pipeline: Pipeline) → Pipeline

Data rescaler goes after global statistics method. Note that currently the intermediate data will be also saved as rescaled.

insert_save_images_after_sweep(pipeline: Pipeline) → Pipeline

For sweep methods we add image saving method after the global statistics and rescaler methods.

insert_save_methods(pipeline: Pipeline) → Pipeline

transform(pipeline: Pipeline) → Pipeline