Installation¶

Currently, the mmg_toolbox module can only be installed manually. PyPi integration will come later.

Requires: Python >=3.10, Numpy, h5py, matplotlib and others

PyPiGitHubConda

pip installation from local repo¶

git clone https://github.com/DiamondLightSource/mmg_toolbox.git
cd mmg_toolbox
python -m pip install .

pip installation from github channel¶

python -m pip install --upgrade git+https://github.com/DiamondLightSource/mmg_toolbox.git

Full installation of Python environment using conda miniforge¶

See conda-forge

Install miniforge (any conda env will do)¶

cd location/of/miniforge
curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh"
bash Miniforge3-Linux-x86_64.sh

You will be asked to enter the location to install conda and whether to change terminal commands [yes].

Install MMG_Toolbox¶

Then, in a new terminal:

conda env create -f https://raw.githubusercontent.com/DiamondLightSource/mmg_toolbox/main/environment.yml
conda activate mmg_toolbox
(mmg_toolbox)$ python -m pip install--upgrade git+https://github.com/DiamondLightSource/mmg_toolbox.git